Upload your pymol files here and add a caption with your protein name and your name:
REWARD: If you win you get a 10 out of 10 on your Research Report.
Ideally it should be on a white background - because you might use it for the poster and/or final report (or the ACS conference).
You can use the same image or different one for the PyMol contest than what you have in your report.
2 images max for the contest
You might be able to get ride of the 'For Evaluation Only' text by saving the .PSE file and opening it in a computer that has the old original version of PyMol - like what is in the Google Docs folder /Misc/Software.
Alternatively, you can paste a white box over it if you open it in Paint or something.
Add a descriptive caption - see below for example.
Due: Friday 14th at midnight.
PS - SAVE your .pse file from PyMol into your Google Docs folder. This is so that we can go back and change or edit things when you use it again. Or get rid of the 'For Evaluation Only' text.
Thanks,
Dr. B
EXAMPLE:
Fig. Farnesyl diphosphate synthetase (EC: 2.5.1.10) from Homo sapiens PDB: 1YV5. Active site residues and inhibitor (ZOL) shown as sticks with carbons gray, oxygens red and nitrogens blue and phosphates of inhibitor (ZOL) shown in pink. Active site waters shown as red spheres - Dr. B
Fig. Phosphotyrosine protein phosphatase(EC: 3.1.3.48) from Mycobacterium Tuberculosis PDB: 1YWF. Active site residues and inhibitor (PO4) shown as lines with carbon green, oxygens red and nitrogens blue and phosphates of inhibitor (PO4) shown in blue and dark center.
Image C
Michael
Image D
Marshall
Yersinia Pestis YopH Protein-Tyrosine-Phosphatase being inhibited by YI1. PDB is 2Y2F. EC# 3.1.3.48
Histidine Acid Phosphatase of Francisella Tularensis (E.C. # 3.1.3.2) , consists of two chains, and therefore two active sites. The active site, composed of residues (Arg-His-Gly-X-Arg-X-Pro), where (-X-) is any given residue, in the protein are shown as sticks colored as carbons green, nitrogens blue, oxygens red. The phosphate ions in the active site are shown as spheres. Waters are red dots. Chain A is colored skyblue, Chain B is colored deepteal. Displayed as cartoon with 60% transparent surface.
One of two Histidine Acid Phosphatase active sites in Francisella Tularensis. The protein is shown as cartoon, colored grey, with some transparency. The active site, composed of the main residues (Arg-His-Gly-X-Arg-X-Pro), where (-X-) is any given residue, is shown in the image as sticks colored by carbons deepteal (left sticks), nitrogens blue, oxygens red. Shown also is the top scoring ligand, BindingDB_50131107, from a preliminary virtual screening of the CB5K library. When the protein was prepared for virtual screening, the phosphate ion shown as spheres in the image above served as the ‘ligand extracted.’ Waters were removed as well. The 14 polar contacts present are shown as neon green dashes.
Image G
Krishna
Beta carbonic anhydrase in Salmonella enterica. The active site is shown as sticks with carbons as grey, oxygens as red, nitrogens as blue, and sulfurs as yellow. The zinc ion is shown as a red sphere with polar contacts in the active site. The rest of the protein is shown as a blue cartoon.
Image H
Christina
Francisella Tularensis Histidine Acid Phosphatase with a phosphate ion in the active site shown as spheres. E.C. # 3.1.3.48
Image I
JC
YI1 ligand (Yellow Sticks) docked in YopH active site (Cyan Lines). 8 polar contacts between atoms.
Image J
Ronnie
Figure 1. Representation of MptpB with active site polar bonded approximately 3 Angstroms around the phosphate ion
PyMol Image Contest - Fall 2011
Upload your pymol files here and add a caption with your protein name and your name:REWARD: If you win you get a 10 out of 10 on your Research Report.
- Ideally it should be on a white background - because you might use it for the poster and/or final report (or the ACS conference).
- You can use the same image or different one for the PyMol contest than what you have in your report.
- 2 images max for the contest
- You might be able to get ride of the 'For Evaluation Only' text by saving the .PSE file and opening it in a computer that has the old original version of PyMol - like what is in the Google Docs folder /Misc/Software.
Alternatively, you can paste a white box over it if you open it in Paint or something.Add a descriptive caption - see below for example.
Due: Friday 14th at midnight.
PS - SAVE your .pse file from PyMol into your Google Docs folder. This is so that we can go back and change or edit things when you use it again. Or get rid of the 'For Evaluation Only' text.
Thanks,
Dr. B
EXAMPLE:
Fig. Farnesyl diphosphate synthetase (EC: 2.5.1.10) from Homo sapiens PDB: 1YV5. Active site residues and inhibitor (ZOL) shown as sticks with carbons gray, oxygens red and nitrogens blue and phosphates of inhibitor (ZOL) shown in pink. Active site waters shown as red spheres - Dr. B
Voting Form on Google Docs
https://docs.google.com/spreadsheet/viewform?formkey=dGRRUGJ1MGJDYVRQaERWN3ZOMXhSUlE6MQImage A
Sadhana
Image B
Hong
Image C
Michael
Image D
Marshall
Image E
Shutian
Image F
Joey (PDB ID: 3IT0)Image G
Krishna
Image H
Christina
Image I
JC
Image J
Ronnie